Computational Biochemistry Research Group
Filling an submitting the following form (see also the example ) will start a Phylogenetic Tree construction and produce postscript files containing the drawn trees .
Sequences:
List of id tags:
Mode:Distance Parsimony
Multiple sequence alignment (optional to parsimony mode): [Note: This is not implemented yet.]
All vs all matrix of alignment (optional to distance mode): [Note: This is not implemented yet.]
Cluster list (optional). The positions of the ids in the list of id tags are used as indexes in this list and the values are the cluster names:
Mode of tree display: Vertical Unrooted Radial RadialLines Phylogram Cladogram Bisect BisectLines
Reordering of leaves: Use the ordering in the tree. Permute the left-right subtree to make the clusters as contiguous as possible. (Clustering has to be defined above) Permute the left-right subtree to make the left subtrees the largest.
Branch labelling: Adaptive, 2-digit precision. No branch labelling.
Leaf display information: Circle with id written. Id written, no circle. Color and shape according to clusters. (Clustering has to be defined above)
Cross referencing: No cross referencing. All labelling is done whit the ids. All labelling is done with an alphanumeric character. Ids are crossreferenced on the right.
